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Package

mlr3proba-package
mlr3proba: Probabilistic Supervised Learning for 'mlr3'

Building Blocks

TaskSurv
Survival Task
LearnerSurv
Survival Learner
PredictionSurv
Prediction Object for Survival
MeasureSurv
Survival Measure
TaskDens
Density Task
LearnerDens
Density Learner
PredictionDens
Prediction Object for Density
MeasureDens
Density Measure

Survival Learners

mlr_learners_surv.coxph
Cox Proportional Hazards Survival Learner
mlr_learners_surv.kaplan
Kaplan-Meier Estimator Survival Learner
mlr_learners_surv.rpart
Rpart Survival Trees Survival Learner

Survival Measures

mlr_measures_surv.calib_alpha
Van Houwelingen's Alpha Survival Measure
mlr_measures_surv.calib_beta
Van Houwelingen's Beta Survival Measure
mlr_measures_surv.chambless_auc
Chambless and Diao's AUC Survival Measure
mlr_measures_surv.cindex
Concordance Statistics Survival Measure
mlr_measures_surv.dcalib
D-Calibration Survival Measure
mlr_measures_surv.graf
Integrated Graf Score Survival Measure
mlr_measures_surv.hung_auc
Hung and Chiang's AUC Survival Measure
mlr_measures_surv.intlogloss
Integrated Log loss Survival Measure
mlr_measures_surv.logloss
Log loss Survival Measure
mlr_measures_surv.mae
Mean Absolute Error Survival Measure
mlr_measures_surv.mse
Mean Squared Error Survival Measure
mlr_measures_surv.nagelk_r2
Nagelkerke's R2 Survival Measure
mlr_measures_surv.oquigley_r2
O'Quigley, Xu, and Stare's R2 Survival Measure
mlr_measures_surv.rmse
Root Mean Squared Error Survival Measure
mlr_measures_surv.schmid
Integrated Schmid Score Survival Measure
mlr_measures_surv.song_auc
Song and Zhou's AUC Survival Measure
mlr_measures_surv.song_tnr
Song and Zhou's TNR Survival Measure
mlr_measures_surv.song_tpr
Song and Zhou's TPR Survival Measure
mlr_measures_surv.uno_auc
Uno's AUC Survival Measure
mlr_measures_surv.uno_tnr
Uno's TNR Survival Measure
mlr_measures_surv.uno_tpr
Uno's TPR Survival Measure
mlr_measures_surv.xu_r2
Xu and O'Quigley's R2 Survival Measure

Survival Tasks

mlr_task_generators_simsurv
Survival Task Generator for Package 'simsurv'
mlr_tasks_actg
ACTG 320 Survival Task
mlr_tasks_gbcs
German Breast Cancer Study Survival Task
mlr_tasks_grace
GRACE 1000 Survival Task
mlr_tasks_lung
Lung Cancer Survival Task
mlr_tasks_rats
Rats Survival Task
mlr_tasks_unemployment
Unemployment Duration Survival Task
mlr_tasks_whas
Worcester Heart Attack Study (WHAS) Survival Task

Survival PipeOps

mlr_pipeops_compose_crank
PipeOpCrankCompositor
mlr_pipeops_compose_distr
PipeOpDistrCompositor
mlr_pipeops_compose_probregr
PipeOpProbregrCompositor
mlr_pipeops_survavg
PipeOpSurvAvg
mlr_pipeops_trafopred_regrsurv
PipeOpPredRegrSurv
mlr_pipeops_trafopred_survregr
PipeOpPredSurvRegr
mlr_pipeops_trafotask_regrsurv
PipeOpTaskRegrSurv
mlr_pipeops_trafotask_survregr
PipeOpTaskSurvRegr
pipeline_crankcompositor() crankcompositor()
Estimate Survival crank Predict Type Pipeline
pipeline_distrcompositor() distrcompositor()
Estimate Survival distr Predict Type Pipeline
pipeline_probregrcompositor()
Estimate Regression distr Predict Type Pipeline
pipeline_survaverager()
Survival Prediction Averaging Pipeline
pipeline_survbagging()
Survival Prediction Averaging Pipeline
pipeline_survtoregr()
Survival to Regression Reduction Pipeline
PipeOpPredTransformer
PipeOpPredTransformer
PipeOpTaskTransformer
PipeOpTaskTransformer
PipeOpTransformer
PipeOpTransformer

Density Learners

mlr_learners_dens.hist
Histogram Density Estimator
mlr_learners_dens.kde
Kernel Density Estimator

Density Measures

mlr_measures_dens.logloss
Log loss Density Measure

Density Tasks

mlr_tasks_faithful
Old Faithful Eruptions Density Task
mlr_tasks_precip
Annual Precipitation Density Task
mlr_task_generators_simdens
Density Task Generator for Package 'distr6'

S3 Methods

as_prediction_dens()
Convert to a Density Prediction
as_prediction_surv()
Convert to a Survival Prediction
as_task_dens()
Convert to a Density Task
as_task_surv()
Convert to a Survival Task

Visualisation

pecs()
Prediction Error Curves for PredictionSurv and LearnerSurv
plot(<LearnerSurv>)
Visualization of fitted LearnerSurv objects

Datasets

actg
ACTG 320 Clinical Trial Dataset
gbcs
German Breast Cancer Study (GBCS) Dataset
grace
GRACE 1000 Dataset
whas
Worcester Heart Attack Study (WHAS) Dataset

Internal

.surv_return()
Get Survival Predict Types
assert_surv()
Assert survival object
MeasureSurvAUC
Abstract Class for survAUC Measures