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Package

mlr3proba mlr3proba-package
mlr3proba: Probabilistic Supervised Learning for 'mlr3'

Building Blocks

TaskSurv
Survival Task
LearnerSurv
Survival Learner
PredictionSurv
Prediction Object for Survival
MeasureSurv
Survival Measure
TaskDens
Density Task
LearnerDens
Density Learner
PredictionDens
Prediction Object for Density
MeasureDens
Density Measure

Survival Learners

mlr_learners_surv.coxph LearnerSurvCoxPH
Cox Proportional Hazards Survival Learner
mlr_learners_surv.kaplan LearnerSurvKaplan
Kaplan-Meier Estimator Survival Learner
mlr_learners_surv.rpart LearnerSurvRpart
Rpart Survival Trees Survival Learner

Survival Measures

mlr_measures_surv.calib_alpha MeasureSurvCalibrationAlpha
Van Houwelingen's Alpha Survival Measure
mlr_measures_surv.calib_beta MeasureSurvCalibrationBeta
Van Houwelingen's Beta Survival Measure
mlr_measures_surv.chambless_auc MeasureSurvChamblessAUC
Chambless and Diao's AUC Survival Measure
mlr_measures_surv.cindex MeasureSurvCindex
Concordance Statistics Survival Measure
mlr_measures_surv.dcalib MeasureSurvDCalibration
D-Calibration Survival Measure
mlr_measures_surv.graf MeasureSurvGraf MeasureSurvBrier mlr_measures_surv.brier
Integrated Graf Score Survival Measure
mlr_measures_surv.hung_auc MeasureSurvHungAUC
Hung and Chiang's AUC Survival Measure
mlr_measures_surv.intlogloss MeasureSurvIntLogloss
Integrated Log loss Survival Measure
mlr_measures_surv.logloss MeasureSurvLogloss
Log loss Survival Measure
mlr_measures_surv.mae MeasureSurvMAE
Mean Absolute Error Survival Measure
mlr_measures_surv.mse MeasureSurvMSE
Mean Squared Error Survival Measure
mlr_measures_surv.nagelk_r2 MeasureSurvNagelkR2
Nagelkerke's R2 Survival Measure
mlr_measures_surv.oquigley_r2 MeasureSurvOQuigleyR2
O'Quigley, Xu, and Stare's R2 Survival Measure
mlr_measures_surv.rcll MeasureSurvRCLL
Right-Censored Log loss Survival Measure
mlr_measures_surv.rmse MeasureSurvRMSE
Root Mean Squared Error Survival Measure
mlr_measures_surv.schmid MeasureSurvSchmid
Integrated Schmid Score Survival Measure
mlr_measures_surv.song_auc MeasureSurvSongAUC
Song and Zhou's AUC Survival Measure
mlr_measures_surv.song_tnr MeasureSurvSongTNR
Song and Zhou's TNR Survival Measure
mlr_measures_surv.song_tpr MeasureSurvSongTPR
Song and Zhou's TPR Survival Measure
mlr_measures_surv.uno_auc MeasureSurvUnoAUC
Uno's AUC Survival Measure
mlr_measures_surv.uno_tnr MeasureSurvUnoTNR
Uno's TNR Survival Measure
mlr_measures_surv.uno_tpr MeasureSurvUnoTPR
Uno's TPR Survival Measure
mlr_measures_surv.xu_r2 MeasureSurvXuR2
Xu and O'Quigley's R2 Survival Measure

Survival Tasks

mlr_task_generators_simsurv TaskGeneratorSimsurv
Survival Task Generator for Package 'simsurv'
mlr_tasks_actg
ACTG 320 Survival Task
mlr_tasks_gbcs
German Breast Cancer Study Survival Task
mlr_tasks_grace
GRACE 1000 Survival Task
mlr_tasks_lung
Lung Cancer Survival Task
mlr_tasks_rats
Rats Survival Task
mlr_tasks_unemployment
Unemployment Duration Survival Task
mlr_tasks_whas
Worcester Heart Attack Study (WHAS) Survival Task

Survival PipeOps

mlr_pipeops_compose_crank PipeOpCrankCompositor
PipeOpCrankCompositor
mlr_pipeops_compose_distr PipeOpDistrCompositor
PipeOpDistrCompositor
mlr_pipeops_compose_probregr PipeOpProbregrCompositor
PipeOpProbregrCompositor
mlr_pipeops_survavg PipeOpSurvAvg
PipeOpSurvAvg
mlr_pipeops_trafopred_regrsurv PipeOpPredRegrSurv
PipeOpPredRegrSurv
mlr_pipeops_trafopred_survregr PipeOpPredSurvRegr
PipeOpPredSurvRegr
mlr_pipeops_trafotask_regrsurv PipeOpTaskRegrSurv
PipeOpTaskRegrSurv
mlr_pipeops_trafotask_survregr PipeOpTaskSurvRegr
PipeOpTaskSurvRegr
pipeline_crankcompositor() crankcompositor()
Estimate Survival crank Predict Type Pipeline
pipeline_distrcompositor() distrcompositor()
Estimate Survival distr Predict Type Pipeline
pipeline_probregrcompositor()
Estimate Regression distr Predict Type Pipeline
pipeline_survaverager()
Survival Prediction Averaging Pipeline
pipeline_survbagging()
Survival Prediction Averaging Pipeline
pipeline_survtoregr()
Survival to Regression Reduction Pipeline
PipeOpPredTransformer
PipeOpPredTransformer
PipeOpTaskTransformer
PipeOpTaskTransformer
PipeOpTransformer
PipeOpTransformer

Density Learners

mlr_learners_dens.hist LearnerDensHistogram
Histogram Density Estimator
mlr_learners_dens.kde LearnerDensKDE
Kernel Density Estimator

Density Measures

Density Tasks

mlr_tasks_faithful
Old Faithful Eruptions Density Task
mlr_tasks_precip
Annual Precipitation Density Task
mlr_task_generators_simdens TaskGeneratorSimdens
Density Task Generator for Package 'distr6'

S3 Methods

as_prediction_dens()
Convert to a Density Prediction
as_prediction_surv()
Convert to a Survival Prediction
as_task_dens()
Convert to a Density Task
as_task_surv()
Convert to a Survival Task

Visualisation

pecs()
Prediction Error Curves for PredictionSurv and LearnerSurv
plot(<LearnerSurv>)
Visualization of fitted LearnerSurv objects

Datasets

actg
ACTG 320 Clinical Trial Dataset
gbcs
German Breast Cancer Study (GBCS) Dataset
grace
GRACE 1000 Dataset
whas
Worcester Heart Attack Study (WHAS) Dataset

Internal

.surv_return()
Get Survival Predict Types
assert_surv()
Assert survival object
MeasureSurvAUC
Abstract Class for survAUC Measures